Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017404.1 Corchorus olitorius cultivar O-4 contig17437, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12055

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1390--1434
2
22.5
2
100
0
90
51
48
0
0
1.00
6071--6202
22
6.0
22
73
8
99
33
13
11
41
1.80
6071--6162
44
2.1
44
85
0
121
32
13
11
42
1.80
6080--6207
66
1.9
66
82
3
159
33
11
12
42
1.79
6125--6230
44
2.4
44
82
1
133
36
10
12
40
1.77
6125--6228
22
4.8
21
75
12
79
37
9
12
40
1.76
7809--7870
3
21.0
3
96
3
117
67
0
32
0
0.91
8153--8216
25
2.6
25
87
0
83
21
34
25
18
1.96
8169--8238
25
2.8
25
88
0
95
20
30
27
22
1.98
8193--8260
35
1.9
36
93
3
120
19
30
27
22
1.97
9775--9992
104
2.1
103
81
5
244
25
20
24
29
1.99
11140--11166
13
2.1
13
100
0
54
14
22
0
62
1.31
11895--11919
12
2.1
12
100
0
50
32
0
16
52
1.44
11941--11987
2
23.5
2
100
0
94
51
0
0
48
1.00

Tables:   1

The End!