Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017405.1 Corchorus olitorius cultivar O-4 contig17438, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23284

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
399--430
16
2.0
16
93
0
55
59
0
0
40
0.97
657--695
20
1.9
21
89
5
62
53
0
10
35
1.35
4160--5038
429
2.0
429
84
6
1136
41
13
15
29
1.85
8235--8272
17
2.2
17
86
9
51
23
18
21
36
1.95
8977--9035
27
2.2
27
87
0
82
27
23
15
33
1.95
8977--9042
27
2.4
27
80
9
80
27
25
13
33
1.94
13769--13812
22
2.0
23
81
4
54
27
6
15
50
1.70
16283--16323
19
2.1
20
90
4
66
21
0
0
78
0.76
16280--16323
16
2.9
15
86
6
61
22
0
0
77
0.77
19991--20057
31
2.2
31
89
5
102
49
11
17
20
1.79
20187--20265
31
2.5
31
93
0
131
35
15
12
36
1.85
20185--20321
31
4.5
31
78
5
127
32
15
12
39
1.85
21109--21175
31
2.2
30
89
5
100
50
11
16
20
1.76
21562--21592
6
5.2
6
100
0
62
0
51
16
32
1.44

Tables:   1

The End!