Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017406.1 Corchorus olitorius cultivar O-4 contig17439, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22423

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1257--1292
18
1.9
18
88
5
54
41
0
11
47
1.39
9252--9382
22
6.0
22
70
9
81
38
15
9
37
1.79
15729--15769
21
2.0
21
85
4
57
63
24
4
7
1.40
18005--18035
15
2.1
15
93
0
53
35
12
16
35
1.87
20847--20884
2
19.0
2
94
0
67
50
2
0
47
1.15
21050--21163
38
3.1
38
66
12
112
42
6
7
44
1.56
21032--21177
71
2.1
71
97
0
274
41
7
6
45
1.57
21045--21153
33
3.2
33
65
29
82
40
6
5
47
1.52
21048--21195
71
2.1
71
89
2
226
43
6
7
42
1.57
21459--21539
39
2.0
40
92
2
137
50
8
3
37
1.51
21648--22057
203
2.0
202
94
2
725
35
10
9
43
1.72

Tables:   1

The End!