Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017408.1 Corchorus olitorius cultivar O-4 contig17441, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9107

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
180--212
9
3.3
10
87
12
50
9
9
0
81
0.87
180--221
19
2.2
20
87
8
61
11
7
0
80
0.88
180--228
20
2.5
20
80
9
57
10
10
0
79
0.93
296--384
6
14.8
6
98
0
133
26
0
0
73
0.84
414--506
35
2.7
35
89
0
141
4
38
43
13
1.65
2462--2517
29
1.9
29
88
0
85
33
7
23
35
1.82
2461--2524
29
2.2
29
82
0
83
35
7
21
34
1.83
4061--4384
30
10.7
30
92
1
459
29
19
20
30
1.97
4371--4476
33
3.2
33
69
7
108
37
14
15
33
1.87
4344--4476
65
2.0
65
98
0
257
36
15
13
34
1.86
4544--4622
28
2.9
28
88
3
108
17
20
26
35
1.95

Tables:   1

The End!