Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017415.1 Corchorus olitorius cultivar O-4 contig17448, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2403
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:727 original size:22 final size:22

Alignment explanation


    Indices: 702--748  Score: 58
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        692 TTTTTAGTTG

                           *      
        702 AGTAAAACCATAAAAGTAAAAT
          1 AGTAAAACCATAAAAATAAAAT

                   ***            
        724 AGTAAAATGGTAAAAATAAAAT
          1 AGTAAAACCATAAAAATAAAAT

               
        746 AGT
          1 AGT

        749 TATAAAAATA


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.62, C:0.04, G:0.13, T:0.21


Consensus pattern (22 bp):   
AGTAAAACCATAAAAATAAAAT

Found at i:871 original size:31 final size:31

Alignment explanation


    Indices: 828--889  Score: 106
    Period size: 31  Copynumber: 2.0  Consensus size: 31

        818 ATATTCAAAA

                   *                       
        828 AATAAGGGTATAATAGGCGATTCAAAAGTTT
          1 AATAAGGATATAATAGGCGATTCAAAAGTTT

                               *           
        859 AATAAGGATATAATAGGCGGTTCAAAAGTTT
          1 AATAAGGATATAATAGGCGATTCAAAAGTTT

        890 TACAAAACTC


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  31   29  1.00

ACGTcount: A:0.42, C:0.06, G:0.23, T:0.29


Consensus pattern (31 bp):   
AATAAGGATATAATAGGCGATTCAAAAGTTT
Done.