Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017417.1 Corchorus olitorius cultivar O-4 contig17450, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55462

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15779--15862
46
1.9
43
85
9
116
39
22
4
33
1.75
16124--16154
15
2.0
16
93
6
55
64
6
6
22
1.40
17456--17490
17
1.9
17
88
11
52
28
22
11
37
1.89
19378--19437
21
2.8
21
82
2
75
15
20
45
20
1.86
22715--22792
32
2.5
32
83
14
108
48
10
12
28
1.74
24411--24469
29
2.0
30
86
6
84
33
18
10
37
1.85
24437--24470
12
2.9
12
91
4
52
38
17
11
32
1.86
27745--27829
42
2.0
42
95
0
152
32
5
21
40
1.77
30258--30290
7
5.0
7
96
3
52
45
0
9
45
1.35
31649--31700
24
2.2
24
85
0
68
21
25
36
17
1.94
38610--38667
10
6.4
9
74
21
50
10
10
3
75
1.15
38616--38653
16
2.3
17
86
4
51
7
7
2
81
0.96
39793--39841
21
2.3
21
82
6
55
40
16
28
14
1.87
44799--44848
26
1.9
26
87
0
73
54
10
20
16
1.70
45778--45929
76
2.0
76
84
5
200
25
29
28
16
1.97
48375--48442
29
2.4
29
97
2
129
38
4
17
39
1.70
49191--49229
19
2.1
19
85
9
53
56
7
25
10
1.59
54105--54152
22
2.2
22
85
14
64
39
2
2
56
1.23
54902--54937
13
2.8
13
91
0
63
66
16
2
13
1.36

Tables:   1

The End!