Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017418.1 Corchorus olitorius cultivar O-4 contig17451, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42125

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1768--1817
3
16.7
3
95
0
91
0
36
0
64
0.94
8180--8254
32
2.4
30
86
6
96
33
10
24
32
1.89
10008--10071
21
3.2
20
82
8
76
35
9
21
32
1.86
20929--21008
20
4.0
19
76
12
72
37
27
13
21
1.91
20935--20988
19
2.7
19
77
8
63
37
31
14
16
1.89
20976--21018
20
2.2
20
95
0
77
37
18
13
30
1.90
21237--21276
19
2.1
19
100
0
80
25
30
10
35
1.88
21328--21386
31
1.9
31
82
6
75
52
16
10
20
1.72
30960--30995
19
1.9
18
88
5
54
33
25
2
38
1.70
31640--31711
30
2.4
30
92
0
117
51
1
5
41
1.34
32405--32432
8
3.5
8
100
0
56
50
10
28
10
1.71
34770--34829
28
2.1
28
100
0
120
21
30
28
20
1.98
36701--36741
17
2.3
18
91
4
66
56
2
4
36
1.34
37110--37148
19
2.1
19
95
0
69
33
0
30
35
1.58

Tables:   1

The End!