Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017419.1 Corchorus olitorius cultivar O-4 contig17452, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24389

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8714--8790
8
9.6
8
86
0
109
50
1
20
27
1.56
8780--8880
34
3.3
34
67
25
96
42
12
21
22
1.87
8756--8971
58
3.6
58
82
10
254
43
9
20
26
1.83
8873--8913
16
2.6
16
84
7
57
43
2
21
31
1.66
8956--9450
8
68.1
7
68
22
133
44
4
20
30
1.72
8938--9194
22
11.8
22
76
12
137
44
5
20
29
1.73
8948--9448
14
36.0
14
68
22
140
44
4
20
30
1.73
8948--9448
36
14.0
36
67
22
165
44
4
20
30
1.73
8946--9194
137
1.8
138
92
4
432
44
5
20
29
1.74
9148--9453
44
7.2
44
74
13
201
44
4
20
30
1.72
9247--9548
22
13.6
22
78
8
283
44
5
20
29
1.74
9478--9615
8
17.2
8
74
3
116
44
2
23
28
1.68
9983--10024
22
1.9
22
90
0
66
40
16
19
23
1.91
10850--10876
1
27.0
1
100
0
54
100
0
0
0
0.00
11131--11181
25
2.0
25
81
7
59
13
5
3
76
1.11
11477--11510
16
2.2
15
89
5
50
29
5
8
55
1.54
12523--12564
20
2.1
20
100
0
84
26
33
11
28
1.92
13971--14010
15
2.6
16
88
4
55
62
12
10
15
1.54
17277--17318
22
1.9
22
85
0
57
11
14
45
28
1.80
20985--21024
15
2.6
16
88
4
55
62
12
10
15
1.54

Tables:   1

The End!