Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017426.1 Corchorus olitorius cultivar O-4 contig17459, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 946

Length: 1577
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26


Found at i:1480 original size:50 final size:47

Alignment explanation


    Indices: 1378--1514  Score: 177
    Period size: 50  Copynumber: 2.8  Consensus size: 47

       1368 GAGCGTGCCA

                        *         *             *           
       1378 ATCAATTTTGTCAAAAAATTGATAAAAAGTGC-GATGAAAATTAAAAG
          1 ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAG-TAAAAATTAAAAG

                                                              
       1425 ATCAATTTTGTCTTAAAAATTGAGAAAAAGATGCAAGTAAAAATTAAAAG
          1 ATCAATTTTGTC-TAAAAATTGAGAAAAAG-TGC-AGTAAAAATTAAAAG

            *           *                           
       1475 TTCAATTTTGTAGTAAAAATTGAGAAAAAGTGCAGTAAAA
          1 ATCAATTTTGT-CTAAAAATTGAGAAAAAGTGCAGTAAAA

       1515 GTAAAGGATT


Statistics
Matches: 80,  Mismatches: 5, Indels: 9
        0.85            0.05        0.10

Matches are distributed among these distances:
  47   12  0.15
  48   22  0.28
  49    6  0.08
  50   39  0.49
  51    1  0.01

ACGTcount: A:0.50, C:0.06, G:0.15, T:0.28


Consensus pattern (47 bp):   
ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAGTAAAAATTAAAAG
Done.