Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017428.1 Corchorus olitorius cultivar O-4 contig17461, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59456

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4330--4357
3
9.3
3
100
0
56
67
0
32
0
0.91
10715--10846
65
2.0
66
95
2
239
27
26
21
25
1.99
20763--21265
255
2.0
252
90
2
794
26
19
17
37
1.93
22907--22980
30
2.4
31
84
2
96
29
16
18
35
1.93
22738--23049
157
2.0
156
85
4
423
30
19
16
34
1.94
25265--25394
65
2.0
65
86
0
179
23
29
26
21
1.99
29557--29642
25
3.4
24
84
7
100
16
9
13
60
1.58
29750--29801
25
2.1
25
96
0
95
34
7
0
57
1.27
29876--29919
15
3.1
14
83
9
54
27
0
4
68
1.09
30111--30174
16
4.0
16
78
6
58
7
39
1
51
1.40
42490--42537
20
2.4
20
82
0
60
16
4
10
68
1.33
43808--43898
47
1.9
47
93
0
155
39
5
18
36
1.74
49056--49104
17
2.9
16
85
8
62
22
20
22
34
1.97
50426--50634
34
6.6
31
82
16
252
35
16
14
33
1.89
50425--50634
62
3.3
60
89
8
289
35
16
14
33
1.89
50426--50667
96
2.5
91
87
10
317
35
16
15
32
1.91
56030--56083
22
2.3
23
84
6
65
50
5
20
24
1.69
57149--57225
29
2.6
30
77
6
84
29
11
27
31
1.92
59074--59100
12
2.2
12
100
0
54
92
7
0
0
0.38

Tables:   1

The End!