Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017432.1 Corchorus olitorius cultivar O-4 contig17465, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11088
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34


Found at i:2388 original size:1 final size:1

Alignment explanation


    Indices: 2382--2418  Score: 65
    Period size: 1  Copynumber: 37.0  Consensus size: 1

       2372 GCCCTTCACC

                           *                     
       2382 TTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

       2419 CTTTCTTTCT


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   1   34  1.00

ACGTcount: A:0.03, C:0.00, G:0.00, T:0.97


Consensus pattern (1 bp):   
T

Found at i:10039 original size:34 final size:34

Alignment explanation


    Indices: 9996--10063  Score: 136
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       9986 CTTCCTGAAG

                                              
       9996 TTGCCCAACCAATAGGAGTAGAGAGTAGAGACAT
          1 TTGCCCAACCAATAGGAGTAGAGAGTAGAGACAT

                                              
      10030 TTGCCCAACCAATAGGAGTAGAGAGTAGAGACAT
          1 TTGCCCAACCAATAGGAGTAGAGAGTAGAGACAT

      10064 ATACTTCGTG


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.38, C:0.18, G:0.26, T:0.18


Consensus pattern (34 bp):   
TTGCCCAACCAATAGGAGTAGAGAGTAGAGACAT
Done.