Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017433.1 Corchorus olitorius cultivar O-4 contig17466, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32831

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
255--493
126
1.9
125
84
4
320
36
11
1
50
1.46
84--409
179
1.8
179
84
2
424
37
9
1
50
1.46
646--727
30
2.7
31
94
3
148
31
15
10
41
1.82
880--952
28
2.5
30
88
6
105
43
13
17
24
1.86
10010--10064
27
2.0
28
92
3
94
60
18
10
10
1.59
12424--12550
41
3.1
40
81
4
146
25
13
11
48
1.76
12445--12560
41
2.8
42
84
5
148
27
12
12
48
1.76
15972--16021
21
2.4
21
89
0
73
12
24
48
16
1.79
16142--16169
10
2.8
10
100
0
56
14
21
53
10
1.70
19206--19539
76
4.4
76
87
2
438
14
24
36
24
1.93
19206--19539
153
2.2
152
85
3
449
14
24
36
24
1.93
24846--25027
88
2.1
88
95
0
328
23
20
18
37
1.94
25049--25093
20
2.2
20
80
0
54
4
4
15
75
1.12

Tables:   1

The End!