Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017438.1 Corchorus olitorius cultivar O-4 contig17471, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3051
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31


Found at i:1199 original size:21 final size:21

Alignment explanation


    Indices: 1173--1221  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       1163 CCGATTGCCA

                     **          
       1173 CACCACCGGTTAAGCCCGTGC
          1 CACCACCGGCCAAGCCCGTGC

                        *        
       1194 CACCACCGGCCATGCCCGTGC
          1 CACCACCGGCCAAGCCCGTGC

              *    
       1215 CATCACC
          1 CACCACC

       1222 ATTCCAAGCC


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.18, C:0.49, G:0.20, T:0.12


Consensus pattern (21 bp):   
CACCACCGGCCAAGCCCGTGC
Done.