Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017440.1 Corchorus olitorius cultivar O-4 contig17473, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2270
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:1329 original size:21 final size:21

Alignment explanation


    Indices: 1303--1352  Score: 64
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1293 CCATTCACCA

                        **       
       1303 TGCCACCACCGGTTAAGCCCG
          1 TGCCACCACCGGCCAAGCCCG

                  *        *     
       1324 TGCCACAACCGGCCATGCCCG
          1 TGCCACCACCGGCCAAGCCCG

                    
       1345 TGCCACCA
          1 TGCCACCA

       1353 TCATTCAGTG


Statistics
Matches: 24,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.20, C:0.46, G:0.22, T:0.12


Consensus pattern (21 bp):   
TGCCACCACCGGCCAAGCCCG
Done.