Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017442.1 Corchorus olitorius cultivar O-4 contig17475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43387

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
669--788
27
4.4
27
92
2
195
40
24
17
18
1.91
1017--1202
59
3.3
59
83
4
213
38
20
17
23
1.93
1211--1238
7
4.0
7
100
0
56
28
0
0
71
0.86
1258--1775
59
8.6
59
90
2
757
39
16
16
26
1.90
1114--1377
144
1.8
144
82
3
343
40
16
12
29
1.86
1258--1775
121
4.3
119
88
3
761
39
16
16
26
1.90
1039--1405
203
1.8
203
90
1
601
40
17
14
27
1.88
1258--1775
183
2.9
179
91
2
799
39
16
16
26
1.90
3493--3532
21
1.9
21
89
0
62
30
15
22
32
1.94
8587--8626
19
2.2
18
86
4
53
30
20
5
45
1.72
12241--12276
19
1.9
18
88
5
54
27
22
8
41
1.82
12377--12402
8
3.2
8
100
0
52
53
11
0
34
1.37
16872--16907
19
1.9
18
88
5
54
27
22
8
41
1.82
23560--23599
19
2.2
18
86
4
53
30
20
5
45
1.72
29146--29171
13
2.0
13
100
0
52
53
30
0
15
1.42
38249--38295
24
2.0
23
87
4
67
38
6
8
46
1.60
41850--43383
154
10.0
154
91
1
2439
41
18
18
21
1.91

Tables:   1

The End!