Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017447.1 Corchorus olitorius cultivar O-4 contig17480, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3945
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28


Found at i:1727 original size:40 final size:41

Alignment explanation


    Indices: 1657--1739  Score: 132
    Period size: 40  Copynumber: 2.0  Consensus size: 41

       1647 AGTATTGGCC

                                                       
       1657 CATCTTTTATTTACAACAATTCCTTTTGCCTTGCATAGTACCT
          1 CATCTTTTATTT--AACAATTCCTTTTGCCTTGCATAGTACCT

                                          *          
       1700 CATCTTTTATTT-ACAATTCCTTTTGCCTTTCATAGTACCT
          1 CATCTTTTATTTAACAATTCCTTTTGCCTTGCATAGTACCT

       1740 TGAATCACCC


Statistics
Matches: 39,  Mismatches: 1, Indels: 3
        0.91            0.02        0.07

Matches are distributed among these distances:
  40   27  0.69
  43   12  0.31

ACGTcount: A:0.22, C:0.25, G:0.06, T:0.47


Consensus pattern (41 bp):   
CATCTTTTATTTAACAATTCCTTTTGCCTTGCATAGTACCT
Done.