Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017449.1 Corchorus olitorius cultivar O-4 contig17482, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3095
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37


Found at i:630 original size:16 final size:16

Alignment explanation


    Indices: 609--642  Score: 59
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        599 CTATCCAGTT

                            
        609 TTAATTTTCTATCACC
          1 TTAATTTTCTATCACC

                        *   
        625 TTAATTTTCTATTACC
          1 TTAATTTTCTATCACC

              
        641 TT
          1 TT

        643 TCTGTTTGAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.24, C:0.21, G:0.00, T:0.56


Consensus pattern (16 bp):   
TTAATTTTCTATCACC
Done.