Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017450.1 Corchorus olitorius cultivar O-4 contig17483, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7305
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29


Found at i:6010 original size:27 final size:28

Alignment explanation


    Indices: 5975--6048  Score: 116
    Period size: 28  Copynumber: 2.7  Consensus size: 28

       5965 GGTCATTTAG

                                        
       5975 GGGGCATTTTGGTCATTTTTGCA-TGCA
          1 GGGGCATTTTGGTCATTTTTGCACTGCA

                                      *  
       6002 GGGGCATTTTGGTCA-TTTTGCACGTTCA
          1 GGGGCATTTTGGTCATTTTTGCAC-TGCA

                               
       6030 GGGGCATTTTGGTCATTTT
          1 GGGGCATTTTGGTCATTTT

       6049 AAGTTCACAT


Statistics
Matches: 43,  Mismatches: 1, Indels: 4
        0.90            0.02        0.08

Matches are distributed among these distances:
  26    7  0.16
  27   15  0.35
  28   18  0.42
  29    3  0.07

ACGTcount: A:0.14, C:0.15, G:0.30, T:0.42


Consensus pattern (28 bp):   
GGGGCATTTTGGTCATTTTTGCACTGCA
Done.