Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017453.1 Corchorus olitorius cultivar O-4 contig17486, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27559

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1547--1619
27
2.7
27
85
4
94
16
17
24
41
1.90
5547--5581
15
2.2
16
90
5
54
68
11
5
14
1.37
9716--9794
41
2.0
40
85
7
106
24
13
15
46
1.82
15688--15726
19
2.1
19
95
0
69
30
30
5
33
1.79
16154--16218
32
2.0
32
100
0
130
44
21
15
18
1.86
18383--18415
15
2.2
15
94
0
57
57
9
12
21
1.62
18390--18552
15
11.1
15
74
9
122
52
4
21
20
1.65
18413--18658
7
34.3
7
66
16
85
53
4
21
19
1.63
18394--18623
22
10.5
22
75
12
190
53
4
21
20
1.64
18551--18661
57
1.9
57
83
3
143
54
5
19
19
1.63
18585--18631
15
3.2
15
81
3
60
57
2
21
19
1.51
18619--18693
21
3.6
21
70
22
68
54
2
21
21
1.57
18506--18694
42
4.9
37
76
14
127
55
4
20
20
1.60
18587--18735
77
1.9
78
79
6
169
53
4
20
21
1.64
18815--18869
25
2.2
25
96
0
101
54
3
12
29
1.55
18900--18962
26
2.4
27
86
10
94
58
1
22
17
1.47
18915--18974
26
2.5
24
84
15
72
55
3
21
20
1.58
22452--23058
303
2.0
303
89
0
919
33
19
19
26
1.96
24615--24651
18
2.0
19
89
5
58
56
10
21
10
1.64
25252--25287
19
1.9
18
88
5
54
33
22
2
41
1.68
26126--26160
18
2.0
18
88
5
54
37
11
5
45
1.64

Tables:   1

The End!