Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017455.1 Corchorus olitorius cultivar O-4 contig17488, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4368
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28


Found at i:4248 original size:21 final size:21

Alignment explanation


    Indices: 4222--4268  Score: 60
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       4212 CTGCTGGGCG

                                  
       4222 CCCAGGCGA-AATGCCTCAGCA
          1 CCCAGGCGACAA-GCCTCAGCA

                         *      *
       4243 CCCAGGCGACAAGGCTCAGCG
          1 CCCAGGCGACAAGCCTCAGCA

                 
       4264 CCCAG
          1 CCCAG

       4269 CTCGATCCCT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  21   21  0.91
  22    2  0.09

ACGTcount: A:0.26, C:0.40, G:0.28, T:0.06


Consensus pattern (21 bp):   
CCCAGGCGACAAGCCTCAGCA
Done.