Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017459.1 Corchorus olitorius cultivar O-4 contig17492, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2009
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.31


Found at i:1375 original size:24 final size:24

Alignment explanation


    Indices: 1348--1403  Score: 103
    Period size: 24  Copynumber: 2.3  Consensus size: 24

       1338 TACATTATTC

                                    
       1348 GTGGCCGGAAATTCTAGACGAGCT
          1 GTGGCCGGAAATTCTAGACGAGCT

                  *                 
       1372 GTGGCCAGAAATTCTAGACGAGCT
          1 GTGGCCGGAAATTCTAGACGAGCT

                    
       1396 GTGGCCGG
          1 GTGGCCGG

       1404 GAGATAATCG


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   30  1.00

ACGTcount: A:0.23, C:0.21, G:0.36, T:0.20


Consensus pattern (24 bp):   
GTGGCCGGAAATTCTAGACGAGCT
Done.