Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017460.1 Corchorus olitorius cultivar O-4 contig17493, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25445

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1178--1227
21
2.5
20
83
6
64
46
8
18
28
1.77
1323--1395
27
2.6
28
82
6
96
41
28
15
15
1.87
5708--5747
9
4.8
9
82
14
50
72
20
0
7
1.08
7506--7695
41
4.6
41
88
5
242
46
18
14
20
1.84
9592--9812
87
2.5
87
83
1
273
38
20
19
21
1.94
9592--9863
29
9.4
29
76
4
226
38
20
19
20
1.93
11484--11513
2
15.0
2
100
0
60
50
0
0
50
1.00
13621--13716
41
2.3
41
85
3
122
27
12
11
48
1.75
16910--16946
18
2.0
19
94
5
67
59
10
18
10
1.59
17533--17568
19
1.9
18
88
5
54
33
22
2
41
1.68
19863--19896
18
1.9
18
88
5
52
38
11
5
44
1.65
22257--22291
16
2.2
16
90
5
54
20
5
14
60
1.54
22676--22726
26
1.9
27
88
11
79
37
5
19
37
1.76
22743--22802
27
2.2
28
81
3
77
30
10
10
50
1.69

Tables:   1

The End!