Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017466.1 Corchorus olitorius cultivar O-4 contig17499, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9725
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:2321 original size:15 final size:15

Alignment explanation


    Indices: 2298--2332  Score: 61
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       2288 GGGGAATAAT

                *          
       2298 CAATCCAAAAACAAA
          1 CAATTCAAAAACAAA

                           
       2313 CAATTCAAAAACAAA
          1 CAATTCAAAAACAAA

                 
       2328 CAATT
          1 CAATT

       2333 TTCTATCCTA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.63, C:0.23, G:0.00, T:0.14


Consensus pattern (15 bp):   
CAATTCAAAAACAAA
Done.