Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017467.1 Corchorus olitorius cultivar O-4 contig17500, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8642
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30


Found at i:147 original size:27 final size:26

Alignment explanation


    Indices: 93--153  Score: 68
    Period size: 27  Copynumber: 2.3  Consensus size: 26

         83 GACCATTTTG

                               *   *  
         93 CCCTTAGATGTTAAATCACTAAATTA
          1 CCCTTAGATGTTAAATCACGAAACTA

                    *        *         
        119 CCCTTAAGTTGTTAAATTACGAAACTA
          1 CCCTT-AGATGTTAAATCACGAAACTA

               *    
        146 CCCATAGA
          1 CCCTTAGA

        154 AGAGAAATTT


Statistics
Matches: 28,  Mismatches: 6, Indels: 2
        0.78            0.17        0.06

Matches are distributed among these distances:
  26    7  0.25
  27   21  0.75

ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31


Consensus pattern (26 bp):   
CCCTTAGATGTTAAATCACGAAACTA

Found at i:7574 original size:17 final size:17

Alignment explanation


    Indices: 7552--7590  Score: 51
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       7542 AAAGCTTTAA

                    *        
       7552 TCCTTTCAGAGCCCATT
          1 TCCTTTCAAAGCCCATT

                  *          
       7569 TCCTTTTAAAGCCCATT
          1 TCCTTTCAAAGCCCATT

            *    
       7586 CCCTT
          1 TCCTT

       7591 ATTAGCTCCT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.18, C:0.36, G:0.08, T:0.38


Consensus pattern (17 bp):   
TCCTTTCAAAGCCCATT
Done.