Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017468.1 Corchorus olitorius cultivar O-4 contig17501, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29676

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6--33
2
14.0
2
100
0
56
50
0
0
50
1.00
1597--1659
23
2.7
23
77
2
72
20
9
20
49
1.77
2274--2319
19
2.3
20
75
20
51
60
13
4
21
1.49
2336--2475
33
4.1
33
81
7
154
29
14
16
40
1.88
8679--8739
28
2.2
28
81
0
68
26
27
16
29
1.97
9134--9167
7
4.9
7
96
0
59
44
2
0
52
1.16
14152--14182
12
2.6
12
94
0
53
29
35
6
29
1.82
15510--15592
22
3.8
22
75
10
64
32
13
9
44
1.76
15573--15611
19
2.1
19
90
0
60
38
12
15
33
1.85
15719--15765
23
2.0
23
95
0
85
44
19
2
34
1.62
15527--15952
22
19.9
22
68
13
137
35
16
9
38
1.81
16034--16471
22
19.7
22
68
15
109
34
15
9
40
1.79
16033--16706
44
15.4
43
68
15
232
35
16
9
39
1.80
16078--16710
66
9.3
66
71
14
292
35
16
9
38
1.80
16476--16708
22
10.5
22
74
9
186
36
17
9
36
1.82
17972--18558
293
2.0
293
89
2
910
24
16
16
42
1.87
18832--18888
27
2.1
27
87
6
80
36
19
3
40
1.69
29646--29673
14
2.0
14
100
0
56
28
21
0
50
1.49

Tables:   1

The End!