Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017469.1 Corchorus olitorius cultivar O-4 contig17502, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38515

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
255--335
39
2.0
40
88
2
119
50
7
6
35
1.55
3102--3211
58
1.9
58
85
7
152
34
18
13
33
1.90
6839--6896
22
2.6
22
86
5
82
36
12
10
41
1.76
6839--7013
44
4.0
44
74
14
150
35
13
9
41
1.77
6949--6997
21
2.2
21
85
7
62
34
14
8
42
1.75
8714--8764
25
2.0
26
81
11
61
52
0
3
43
1.19
10633--10695
33
1.9
33
96
0
117
57
9
6
26
1.55
11409--11518
31
3.7
29
84
11
125
29
26
10
34
1.89
11438--11518
31
2.6
31
96
0
144
27
27
9
35
1.88
11438--11540
31
3.4
31
87
4
129
27
24
13
34
1.93
12263--12320
29
1.9
31
82
6
75
32
24
8
34
1.86
14400--14428
11
2.6
11
100
0
58
75
0
0
24
0.80
23542--23615
10
7.7
10
72
14
66
55
1
0
43
1.08
23542--23609
7
9.6
7
75
20
52
54
1
0
44
1.09
28725--28758
10
3.4
10
95
0
59
38
17
8
35
1.81
29613--29707
45
2.1
45
98
0
181
42
2
10
45
1.50
30264--30302
19
2.0
20
90
5
62
38
10
20
30
1.86
31999--32041
15
3.0
15
90
6
63
0
0
25
74
0.82
31999--32032
13
2.6
13
100
0
68
0
0
23
76
0.79

Tables:   1

The End!