Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017476.1 Corchorus olitorius cultivar O-4 contig17509, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32310

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
445--483
13
2.7
15
80
15
55
38
23
7
30
1.83
713--771
29
2.0
29
100
0
118
16
25
33
23
1.96
1433--1463
16
1.9
16
93
0
53
54
0
9
35
1.33
2076--2177
48
2.1
48
100
0
204
18
16
14
50
1.79
2066--2147
24
3.3
24
67
16
69
18
15
13
52
1.75
2094--2171
24
3.2
24
68
13
79
19
17
14
48
1.81
6528--6633
47
2.3
47
85
9
139
20
20
3
54
1.60
6607--6789
22
8.1
22
75
10
163
11
22
7
58
1.58
6800--7526
47
15.4
47
88
4
946
23
20
6
49
1.72
6800--7526
141
5.1
141
91
3
1079
23
20
6
49
1.72
14420--14461
16
2.5
17
85
14
61
80
4
0
14
0.86
14420--14456
18
2.1
17
90
5
56
83
2
0
13
0.74
14427--14473
16
2.9
15
84
12
58
80
4
0
14
0.85
14763--14797
14
2.4
15
90
4
54
77
0
17
5
0.96
16212--16840
168
3.7
168
92
0
988
28
20
17
33
1.96
16805--16844
20
2.0
20
90
0
62
25
22
25
27
2.00
16880--17394
30
17.2
30
90
0
789
20
13
17
48
1.81
19698--19745
18
2.5
20
80
10
64
31
50
0
18
1.48
23801--23870
28
2.5
28
100
0
140
34
12
20
32
1.90
24599--24651
3
18.3
3
92
7
92
0
32
0
67
0.91
25624--25677
20
2.8
20
82
2
65
46
11
5
37
1.63
25717--25772
21
2.7
21
72
22
55
48
12
10
28
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26303--26333
16
1.9
16
100
0
62
54
0
12
32
1.38
29030--29084
27
2.0
27
82
0
65
34
14
20
30
1.92
29541--29634
49
1.9
49
82
4
118
8
31
17
42
1.79

Tables:   1

The End!