Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017480.1 Corchorus olitorius cultivar O-4 contig17513, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2011
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39


Found at i:876 original size:154 final size:154

Alignment explanation


    Indices: 596--2008  Score: 2391
    Period size: 154  Copynumber: 9.2  Consensus size: 154

        586 AGTATCATTC

                                                                      *      
        596 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACT
          1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT

                                 *                         *                 
        661 ATAATCATTTTGGTGAGATTATTCCACTGTGAAGTTTTTAGCTCATTCGGAACACTTGTTATTTT
         66 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT

                      *           * 
        726 GGGCCTATCGCGGCCCATTAGTGA
        131 GGGCCTATCGGGGCCCATTAGTTA

                                                                       *     
        750 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCGTAACT
          1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT

                   *                 *                         *             
        815 ATAATCAATTTGGTGAGATTAGTCCCCTGTGAAGTTTTTAGCTCATTTGGATCACTTGTTATTTT
         66 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT

                                  * 
        880 GGGCCTATCGGGGCCCATTAGTGA
        131 GGGCCTATCGGGGCCCATTAGTTA

              *                                *                             
        904 CTATTTTGAATCGTCTTCGATTTGGCAAACCTCAAGGCTTTTCTTTCCATTGTTTATGGCCTAAC
          1 C-GTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAC

                                                                             
        969 TATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT
         65 TATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT

               *                    *
       1034 TGGACCTATCGGGGCCCATTAGTTC
        130 TGGGCCTATCGGGGCCCATTAGTTA

                                                                             
       1059 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT
          1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT

                   *      *                      *                           
       1124 ATAATCAATTTGGTCAGATTAGTCCACTGTGAAGTTTGTAGCTCATTTGGAACACTTGTTATTTT
         66 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT

                                    
       1189 GGGCCTATCGGGGCCCATTAGTT-
        131 GGGCCTATCGGGGCCCATTAGTTA

                                               *                        *    
       1212 CTGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCATAAC
          1 C-GTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAC

                        *                                           *        
       1277 TATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACATGTTATTT
         65 TATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT

             *                      *
       1342 TAGGCCTATCGGGGCCCATTAGTTC
        130 TGGGCCTATCGGGGCCCATTAGTTA

                                                                            *
       1367 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACC
          1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT

                   *      *           *      *         *        *            
       1432 ATAATCAATTTGGTCAGATTAGTCCATTGTGAAATTTTTAGCTTATTTGGAAAACTTGTTATTTT
         66 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT

                                  * 
       1497 GGGCCTATCGGGGCCCATTAGTGA
        131 GGGCCTATCGGGGCCCATTAGTTA

               *  *    *                                                     
       1521 CGTATTAAATCATCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT
          1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT

                                                                             
       1586 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
         66 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT

                      *            *
       1651 GGGCCTATCGAGGCCCATTAGTTC
        131 GGGCCTATCGGGGCCCATTAGTTA

                                              *                              
       1675 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACT
          1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT

                                                                             
       1740 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
         66 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT

                                    
       1805 GGGCCTATCGGGGCCCATTAGTTA
        131 GGGCCTATCGGGGCCCATTAGTTA

                                                                             
       1829 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT
          1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT

                                                     *                       
       1894 ATAATCATTTTGGTGAGATTAGTCCACCTGTGAAG-TTTTACCTCA-TTGGAACACTTGTTATTT
         66 ATAATCATTTTGGTGAGATTAGTCCA-CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT

                 *    **  *         *
       1957 TGGGCATATCAAGGACCATTAGTTC
        130 TGGGCCTATCGGGGCCCATTAGTTA

                                       
       1982 CGTTTTGAATCGTCTTCGATTTGGCAA
          1 CGTTTTGAATCGTCTTCGATTTGGCAA

       2009 CCC


Statistics
Matches: 1184,  Mismatches: 71, Indels: 9
        0.94            0.06        0.01

Matches are distributed among these distances:
 153   66  0.06
 154  964  0.81
 155  154  0.13

ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40


Consensus pattern (154 bp):   
CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT
ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
GGGCCTATCGGGGCCCATTAGTTA

Done.