Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017485.1 Corchorus olitorius cultivar O-4 contig17518, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3647
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26


Found at i:2748 original size:18 final size:18

Alignment explanation


    Indices: 2714--2749  Score: 54
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       2704 AAGTTTCAAA

                      *       
       2714 AAAAAAAAGAGGAAAAAG
          1 AAAAAAAAGAAGAAAAAG

                              
       2732 AAAAAAAAGAAAGAAAAA
          1 AAAAAAAAG-AAGAAAAA

       2750 AAGGGAGGGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    9  0.56
  19    7  0.44

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (18 bp):   
AAAAAAAAGAAGAAAAAG

Found at i:2751 original size:22 final size:21

Alignment explanation


    Indices: 2711--2751  Score: 55
    Period size: 22  Copynumber: 1.9  Consensus size: 21

       2701 CTGAAGTTTC

                         **      
       2711 AAAAAAAAAAAGAGGAAAAAG
          1 AAAAAAAAAAAGAAAAAAAAG

                                
       2732 AAAAAAAAGAAAGAAAAAAA
          1 AAAAAAAA-AAAGAAAAAAA

       2752 GGGAGGGTTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21    8  0.47
  22    9  0.53

ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00


Consensus pattern (21 bp):   
AAAAAAAAAAAGAAAAAAAAG
Done.