Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017488.1 Corchorus olitorius cultivar O-4 contig17521, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3407
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29


Found at i:1424 original size:24 final size:23

Alignment explanation


    Indices: 1396--1442  Score: 67
    Period size: 24  Copynumber: 2.0  Consensus size: 23

       1386 AATGTAATGC

                    *               
       1396 ATGCAAACTTAAGAAAAGAAAAAA
          1 ATGCAAACATAA-AAAAGAAAAAA

                           *       
       1420 ATGCAAACATAAAAAGGAAAAAA
          1 ATGCAAACATAAAAAAGAAAAAA

       1443 GAAATGCAAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  23   10  0.48
  24   11  0.52

ACGTcount: A:0.68, C:0.09, G:0.13, T:0.11


Consensus pattern (23 bp):   
ATGCAAACATAAAAAAGAAAAAA
Done.