Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017489.1 Corchorus olitorius cultivar O-4 contig17522, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2364
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:1378 original size:22 final size:22

Alignment explanation


    Indices: 1336--1378  Score: 52
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1326 TTTCTAATTA

                           **     
       1336 ATTGTTTTCTTGAATTTTCTTG
          1 ATTGTTTTCTTGAATAGTCTTG

                                  
       1358 ATTGTTTTCTT-AGATAGTCTT
          1 ATTGTTTTCTTGA-ATAGTCTT

       1379 AATTACTAGT


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  21    1  0.06
  22   17  0.94

ACGTcount: A:0.16, C:0.09, G:0.14, T:0.60


Consensus pattern (22 bp):   
ATTGTTTTCTTGAATAGTCTTG
Done.