Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017492.1 Corchorus olitorius cultivar O-4 contig17525, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2108
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33


Found at i:192 original size:9 final size:9

Alignment explanation


    Indices: 172--209  Score: 60
    Period size: 9  Copynumber: 4.3  Consensus size: 9

        162 TTAATTCATT

                     
        172 TAATTTCC-
          1 TAATTTCCA

                     
        180 TAATTTCCA
          1 TAATTTCCA

                    *
        189 TAATTTCCC
          1 TAATTTCCA

                     
        198 TAATTTCCA
          1 TAATTTCCA

               
        207 TAA
          1 TAA

        210 GTAATTTGGG


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
   8    8  0.30
   9   19  0.70

ACGTcount: A:0.32, C:0.24, G:0.00, T:0.45


Consensus pattern (9 bp):   
TAATTTCCA

Found at i:201 original size:18 final size:17

Alignment explanation


    Indices: 172--209  Score: 67
    Period size: 18  Copynumber: 2.2  Consensus size: 17

        162 TTAATTCATT

                             
        172 TAATTTCCTAATTTCCA
          1 TAATTTCCTAATTTCCA

                              
        189 TAATTTCCCTAATTTCCA
          1 TAATTT-CCTAATTTCCA

               
        207 TAA
          1 TAA

        210 GTAATTTGGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  17    6  0.30
  18   14  0.70

ACGTcount: A:0.32, C:0.24, G:0.00, T:0.45


Consensus pattern (17 bp):   
TAATTTCCTAATTTCCA
Done.