Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017496.1 Corchorus olitorius cultivar O-4 contig17529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135813

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1402--1440
19
2.1
19
85
0
51
46
12
7
33
1.71
2727--2752
7
3.7
7
100
0
52
11
46
11
30
1.76
13454--13480
13
2.1
13
100
0
54
22
22
22
33
1.97
29733--29757
2
12.5
2
100
0
50
48
0
0
52
1.00
31047--31181
45
3.0
45
86
2
173
25
3
29
40
1.73
35856--35896
14
2.9
14
85
7
57
2
12
12
73
1.20
35862--35896
18
2.0
17
88
5
52
0
8
14
77
0.99
42505--42559
27
2.0
27
96
0
101
45
18
5
30
1.72
42769--42808
20
2.0
20
100
0
80
0
30
20
50
1.49
44951--44985
11
3.2
11
91
0
61
80
17
2
0
0.84
47125--47399
143
1.9
141
88
4
410
26
18
16
38
1.92
50184--50227
18
2.4
18
88
7
63
50
2
4
43
1.35
65393--65517
66
1.9
64
88
4
187
43
12
8
35
1.74
77695--77940
123
2.0
123
100
0
492
36
17
11
34
1.86
94062--94103
19
2.1
19
86
8
57
14
7
45
33
1.72
108961--109000
21
1.9
21
89
0
62
27
20
37
15
1.92
116235--116300
32
2.1
32
100
0
132
72
3
12
12
1.23
116235--116286
18
3.1
18
68
21
58
71
1
13
13
1.24
117237--117283
24
2.0
24
95
0
85
42
4
12
40
1.63
117439--117489
24
2.1
25
92
3
86
49
15
19
15
1.80
120113--120345
118
2.0
118
94
0
412
36
24
6
32
1.81
121576--121852
22
12.4
22
69
16
142
38
10
17
33
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121727--121787
21
2.8
21
82
9
61
39
8
14
37
1.76
121769--121818
26
1.9
26
87
0
73
32
10
32
26
1.89
121911--122096
22
8.7
22
73
14
131
34
10
14
40
1.81
122019--122096
40
2.0
40
89
5
122
33
10
11
44
1.74
122475--122619
70
2.1
70
98
0
281
24
6
24
44
1.76
123092--123170
38
2.1
38
95
0
140
27
12
10
49
1.73
123370--123403
17
1.9
18
88
5
52
44
5
0
50
1.26
130193--130240
23
2.1
23
96
0
87
12
22
27
37
1.90

Tables:   1

The End!