Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017498.1 Corchorus olitorius cultivar O-4 contig17531, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95351

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6154--6205
23
2.2
23
82
3
59
23
28
25
23
1.99
7992--8685
50
13.8
50
79
6
627
41
4
16
37
1.69
8086--8667
100
5.8
100
87
3
753
41
4
16
37
1.69
7992--8686
150
4.6
151
79
6
696
42
4
16
36
1.69
8802--8859
18
3.1
18
82
7
62
43
3
13
39
1.61
9403--9618
48
4.5
48
92
0
351
12
22
20
44
1.84
9593--9632
20
2.0
20
95
0
71
15
17
10
57
1.64
9549--10220
68
10.0
68
85
5
823
12
21
18
47
1.81
9625--9810
58
3.1
58
83
13
255
11
22
20
44
1.84
9854--9893
20
2.0
20
95
0
71
15
17
10
57
1.64
9923--9967
20
2.2
20
88
0
63
13
20
11
55
1.68
28124--28151
3
9.3
3
100
0
56
67
0
32
0
0.91
32714--32762
21
2.3
22
85
3
73
4
6
32
57
1.42
34306--36346
925
2.2
913
94
2
3504
35
14
16
33
1.89
38414--38443
2
15.0
2
92
0
51
46
3
0
50
1.18
48040--48077
15
2.5
15
91
4
58
63
13
2
21
1.42
49393--49488
28
3.4
28
85
1
129
17
18
28
35
1.94
50024--50074
25
2.1
24
96
3
93
21
25
3
49
1.67
50683--50717
17
2.1
17
94
0
61
40
20
11
28
1.87
53738--53774
18
2.1
18
90
5
58
78
5
10
5
1.08
53783--53815
16
2.1
16
94
0
57
39
9
12
39
1.74
55605--55681
39
2.0
39
89
5
120
22
22
9
46
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57951--57989
14
2.8
14
84
11
53
74
2
23
0
0.94
58309--58346
19
2.0
19
89
0
58
42
5
5
47
1.48
59929--60146
46
4.8
46
84
4
282
43
7
14
34
1.73
59931--60146
91
2.4
92
88
5
332
43
7
14
34
1.73
61143--61172
9
3.3
9
100
0
60
0
33
10
56
1.32
73979--74144
83
2.0
83
92
0
278
46
8
7
37
1.62
77076--77133
24
2.4
24
88
0
89
24
41
12
22
1.87
84366--84439
28
2.7
27
77
10
78
39
14
20
25
1.91
85337--85414
36
2.2
35
90
6
122
7
38
41
12
1.72
85389--85438
24
2.1
24
81
7
57
8
44
40
8
1.63
85453--85484
15
2.1
16
94
5
57
0
18
0
81
0.70
87289--87518
44
5.2
44
76
11
204
36
9
17
36
1.82
87288--87518
22
10.5
22
72
13
154
36
9
17
36
1.83
87286--87514
65
3.5
67
80
11
249
35
9
18
37
1.83
87519--87561
22
2.0
22
90
0
68
44
9
16
30
1.79
87552--87669
22
5.4
22
73
13
100
34
8
18
38
1.81
87606--87683
22
3.6
21
77
8
77
35
6
17
39
1.76
87723--87763
22
1.9
22
90
5
66
36
12
14
36
1.84
88215--88262
21
2.3
21
100
0
96
31
16
27
25
1.97
90150--90234
36
2.4
36
84
7
102
7
35
44
12
1.70

Tables:   1

The End!