Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001750.1 Corchorus olitorius cultivar O-4 contig01750, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1046
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29


Found at i:613 original size:23 final size:22

Alignment explanation


    Indices: 565--614  Score: 57
    Period size: 23  Copynumber: 2.2  Consensus size: 22

        555 ATGGCCCAAC

                           *       
        565 GCTGGCCAGGCGCGCGGGCCTGA
          1 GCTGGCCAGGCGCGCAGGCC-GA

                                    
        588 GCTGGCCCAGGCGCGCCAGGCC-A
          1 GCTGG-CCAGGCGCG-CAGGCCGA

                
        611 GCTG
          1 GCTG

        615 TGGGCCAGCG


Statistics
Matches: 24,  Mismatches: 1, Indels: 4
        0.83            0.03        0.14

Matches are distributed among these distances:
  23   10  0.42
  24    9  0.38
  25    5  0.21

ACGTcount: A:0.10, C:0.38, G:0.44, T:0.08


Consensus pattern (22 bp):   
GCTGGCCAGGCGCGCAGGCCGA
Done.