Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017501.1 Corchorus olitorius cultivar O-4 contig17534, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16090

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
408--469
31
2.0
31
90
0
97
45
8
19
27
1.78
625--1107
246
2.0
243
94
1
849
39
13
13
33
1.84
1703--1735
17
1.9
17
88
11
50
39
0
0
60
0.97
2622--2789
77
2.2
78
87
7
236
51
1
14
32
1.53
3264--3342
23
3.5
22
75
11
70
36
36
17
8
1.81
8356--8405
14
3.4
16
82
17
65
56
0
0
44
0.99
8540--8665
63
2.0
63
92
0
207
20
21
23
34
1.97
8684--8734
25
2.0
25
100
0
102
43
13
27
15
1.85
8709--9044
174
1.9
174
93
0
582
30
19
19
30
1.96
8948--9354
204
2.0
205
90
2
640
32
19
16
31
1.94
10269--10333
34
1.9
34
84
6
87
43
1
26
29
1.64
13157--13235
29
2.7
30
84
5
99
31
17
11
39
1.85

Tables:   1

The End!