Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017506.1 Corchorus olitorius cultivar O-4 contig17539, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48402

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6706--6739
2
17.0
2
100
0
68
50
0
0
50
1.00
7293--7352
17
3.5
17
79
4
68
26
11
18
43
1.84
7453--7494
19
2.2
19
95
0
75
38
2
7
52
1.42
7470--7520
26
2.0
26
96
0
93
39
1
5
52
1.37
7523--7552
13
2.2
14
94
5
53
40
0
16
43
1.48
7712--7746
12
2.8
13
86
8
54
25
17
17
40
1.90
10620--10649
5
6.0
5
100
0
60
40
40
0
20
1.52
15461--15500
21
2.0
21
85
5
55
62
7
17
12
1.52
15773--15963
101
1.9
99
84
7
235
36
17
18
26
1.94
16595--16627
17
1.9
17
93
0
57
18
27
15
39
1.90
22693--22751
29
2.0
30
86
6
84
25
13
15
45
1.82
22689--22762
29
2.5
30
78
12
80
24
16
13
45
1.83
22906--23000
31
3.1
31
90
4
149
40
12
13
33
1.83
23133--23373
128
1.9
125
86
4
340
51
2
11
35
1.49
23968--24094
31
4.1
31
94
3
211
31
14
11
42
1.81
24226--24296
31
2.4
30
85
4
90
39
12
16
30
1.86
26315--26404
45
2.0
45
97
0
171
47
13
12
26
1.78
42051--42131
27
3.2
27
62
25
68
46
13
12
27
1.79
42039--42136
48
2.0
48
96
0
178
50
14
10
25
1.74
42557--42696
72
2.0
69
91
6
230
47
6
9
37
1.62
43258--43286
3
10.0
3
92
7
51
65
0
0
34
0.93
47670--47713
15
2.9
15
89
0
61
13
11
34
40
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47676--47734
30
2.0
30
86
0
82
10
8
37
44
1.69
47691--47728
15
2.5
15
91
0
58
5
7
39
47
1.55

Tables:   1

The End!