Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017507.1 Corchorus olitorius cultivar O-4 contig17540, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 916

Length: 1527
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43


Found at i:1273 original size:14 final size:14

Alignment explanation


    Indices: 1254--1287  Score: 59
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1244 TTTTATAATT

                          
       1254 ATTTTATTTTTACC
          1 ATTTTATTTTTACC

                         *
       1268 ATTTTATTTTTACT
          1 ATTTTATTTTTACC

                  
       1282 ATTTTA
          1 ATTTTA

       1288 ATTTAAAAGG


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   19  1.00

ACGTcount: A:0.24, C:0.09, G:0.00, T:0.68


Consensus pattern (14 bp):   
ATTTTATTTTTACC

Found at i:1335 original size:15 final size:15

Alignment explanation


    Indices: 1315--1345  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1305 GATTAACATG

                           
       1315 TTTCTATTTGATAGT
          1 TTTCTATTTGATAGT

                           
       1330 TTTCTATTTGATAGT
          1 TTTCTATTTGATAGT

             
       1345 T
          1 T

       1346 AATGTATTGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61


Consensus pattern (15 bp):   
TTTCTATTTGATAGT
Done.