genome.fa.s17509.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017509.1 Corchorus olitorius cultivar O-4 contig17542, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56934

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7299--7329	15	2.1	15	93	0	53	51	9	22	16	1.73
7945--7987	12	3.6	12	87	0	59	46	6	2	44	1.43
7942--7976	2	17.5	2	93	0	61	48	2	0	48	1.16
9732--9837	53	2.0	53	100	0	212	24	20	16	37	1.93
11575--11633	32	1.9	31	86	6	84	40	8	15	35	1.77
15521--15559	20	2.0	20	100	0	78	30	2	20	46	1.64
21849--21877	5	5.8	5	100	0	58	82	0	17	0	0.66
23349--23376	13	2.2	13	100	0	56	0	14	0	85	0.59
25634--25684	25	2.0	25	92	0	84	35	11	29	23	1.90
28939--28978	21	1.9	21	85	10	55	40	0	15	45	1.46
28923--28971	23	2.1	23	81	7	55	38	2	12	46	1.53
31672--31718	2	23.5	2	100	0	94	0	48	0	51	1.00
33431--33470	21	1.9	21	94	0	71	30	22	30	17	1.97
35479--35508	6	5.0	6	100	0	60	16	0	16	66	1.25
38182--38353	37	4.7	37	86	5	226	36	15	15	31	1.90
38187--38353	73	2.3	71	89	3	253	37	15	15	31	1.89
38310--38473	52	3.1	52	94	2	283	39	11	17	32	1.85
44964--45092	27	4.8	27	90	0	186	38	33	16	11	1.85
44964--45083	54	2.2	54	98	0	231	41	32	15	10	1.81
45423--45499	23	3.2	23	66	20	66	20	29	10	38	1.86
45384--45579	50	3.9	50	95	0	329	26	27	10	36	1.89
45438--45576	27	5.4	27	63	19	82	26	27	10	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45470--45549	23	3.3	23	66	19	63	20	30	11	38	1.87
45852--46206	65	5.5	64	89	2	505	27	22	14	35	1.94
45836--46268	130	3.3	128	83	5	521	26	22	15	35	1.94
46183--46370	67	2.8	67	89	2	279	27	22	14	35	1.94
51301--52173	30	29.1	30	86	1	1097	46	19	13	20	1.83
52169--52402	36	6.3	36	74	12	170	41	17	21	20	1.90
52305--52402	35	2.8	36	80	3	117	38	18	22	20	1.93
53914--53961	17	3.1	15	81	18	55	47	10	6	35	1.63

Tables:   1

The End!