Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017513.1 Corchorus olitorius cultivar O-4 contig17546, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51643

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
159--202
21
2.1
21
86
0
61
38
13
2
45
1.56
827--870
22
2.0
21
91
4
70
47
0
4
47
1.22
13246--14364
35
32.4
35
89
2
1534
26
13
18
41
1.88
13650--13699
25
2.0
25
92
0
82
28
16
20
36
1.93
20363--20566
97
2.1
97
83
2
248
36
9
11
42
1.74
31158--31305
30
4.9
30
83
3
172
20
10
23
45
1.81
31311--31411
30
3.4
29
80
5
121
23
14
17
43
1.87
34521--34571
7
7.4
7
82
4
68
11
0
43
45
1.40
34530--34568
20
2.0
20
89
0
60
7
0
46
46
1.31
34715--34752
2
19.0
2
100
0
76
50
0
0
50
1.00
34770--34819
25
2.0
25
92
0
82
32
20
18
30
1.96
38981--39067
28
3.1
28
86
3
120
14
21
24
39
1.91
39596--39647
25
2.1
25
85
7
70
21
26
7
44
1.79
46141--46198
26
2.2
26
96
0
107
31
5
17
46
1.70
46115--46195
26
3.2
24
84
8
90
35
4
13
45
1.65
49949--50031
24
3.5
24
66
21
75
26
25
16
31
1.97
50230--50288
24
2.5
24
82
0
73
37
27
11
23
1.90

Tables:   1

The End!