Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017516.1 Corchorus olitorius cultivar O-4 contig17549, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5627
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30


Found at i:3966 original size:14 final size:14

Alignment explanation


    Indices: 3947--3973  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       3937 ATTTCATTCA

                          
       3947 AAAAAAATAAAAAT
          1 AAAAAAATAAAAAT

                         
       3961 AAAAAAATAAAAA
          1 AAAAAAATAAAAA

       3974 CTGAACGTCT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11


Consensus pattern (14 bp):   
AAAAAAATAAAAAT

Found at i:5160 original size:12 final size:13

Alignment explanation


    Indices: 5143--5174  Score: 50
    Period size: 12  Copynumber: 2.6  Consensus size: 13

       5133 TTTCTTCCTA

                         
       5143 AAATTTAGGCA-C
          1 AAATTTAGGCACC

                         
       5155 AAATTTA-GCACC
          1 AAATTTAGGCACC

                    
       5167 AAATTTAG
          1 AAATTTAG

       5175 CCCCTAGTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  11    3  0.17
  12   15  0.83

ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28


Consensus pattern (13 bp):   
AAATTTAGGCACC
Done.