Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017518.1 Corchorus olitorius cultivar O-4 contig17551, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17056

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
521--701
60
3.0
60
94
2
301
44
11
14
29
1.80
898--1003
29
3.7
28
84
2
122
39
22
15
22
1.91
2647--2686
20
2.0
20
95
0
71
50
17
5
27
1.67
6563--6636
35
2.1
35
94
0
130
22
17
17
41
1.89
6679--6710
16
2.0
16
93
0
55
53
0
0
46
1.00
6664--6805
18
8.1
18
69
18
70
50
2
0
45
1.21
6663--6710
19
2.5
19
83
10
62
47
2
0
50
1.12
6663--6802
32
4.1
34
69
17
87
50
2
0
46
1.21
6848--6882
18
1.9
18
94
0
61
28
8
11
51
1.67
9967--10008
19
2.2
19
83
8
50
28
4
2
64
1.26
10257--10291
17
2.1
17
94
0
61
45
0
14
40
1.45
13019--13060
21
2.0
21
90
0
66
57
19
9
14
1.64
15228--15267
21
2.1
19
86
13
55
20
27
15
37
1.92
16072--16135
32
1.9
34
84
6
87
14
14
1
70
1.25
15238--16535
647
2.0
647
98
0
2508
29
16
14
39
1.88

Tables:   1

The End!