genome.fa.s17520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017520.1 Corchorus olitorius cultivar O-4 contig17553, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107215

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1025--1100	39	1.9	39	92	5	127	36	11	11	39	1.79
1960--2030	29	2.4	30	84	15	103	32	28	7	32	1.84
2406--2502	45	2.2	43	81	10	106	46	9	9	35	1.68
9479--9518	21	1.9	21	85	10	55	70	5	5	20	1.26
15692--15730	2	19.5	2	89	0	60	48	0	5	46	1.24
17760--17811	22	2.3	22	81	12	61	65	1	1	30	1.14
18290--18314	2	12.5	2	100	0	50	52	0	0	48	1.00
21863--22004	73	1.9	72	83	8	180	26	16	26	30	1.97
22190--22226	13	2.8	13	87	0	56	35	27	2	35	1.71
22470--23328	437	2.0	432	82	5	1068	43	13	13	29	1.82
22474--23442	439	2.2	434	80	6	994	43	13	14	29	1.83
31459--31524	32	2.0	34	85	5	91	9	33	43	13	1.76
31509--31582	33	2.2	33	92	0	121	1	35	44	18	1.59
42619--42725	39	2.8	37	75	12	101	46	16	13	23	1.82
42880--42934	20	2.8	20	88	0	74	25	25	23	25	2.00
43144--43276	70	1.9	70	92	0	221	28	17	28	25	1.97
43388--43520	69	1.9	69	96	0	248	28	17	29	24	1.97
44078--44108	1	31.0	1	100	0	62	0	0	0	100	0.00
44445--44599	50	3.1	50	92	0	229	36	14	17	30	1.90
45211--45266	26	2.2	26	90	6	87	0	0	17	82	0.68
45223--45274	10	5.2	10	83	4	61	0	0	15	84	0.62
45211--45274	29	2.2	30	88	8	96	0	0	17	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45223--45273	20	2.6	20	90	3	86	0	0	15	84	0.63
68230--68294	30	2.2	30	91	0	103	58	1	21	18	1.47
73917--74032	57	2.0	57	98	0	223	33	14	21	30	1.93
84636--84727	28	3.3	28	86	1	123	40	23	18	17	1.91
84797--84831	18	1.9	18	100	0	70	45	20	11	22	1.82
85036--85109	26	2.8	27	81	4	96	39	25	16	18	1.91
87169--87198	15	2.1	14	93	6	51	43	0	10	46	1.37
90135--90385	106	2.4	105	90	3	382	40	9	8	41	1.69
91293--91335	21	2.0	22	86	8	63	53	23	13	9	1.69
92194--92237	22	2.0	22	82	8	54	9	13	4	72	1.24
96779--96812	17	2.0	16	88	11	50	55	0	5	38	1.24
101714--102074	69	5.2	69	92	2	575	28	15	28	26	1.96
102161--102372	86	2.4	86	92	2	343	35	13	16	34	1.88
103162--103201	13	2.9	13	82	13	53	72	0	2	25	0.97
104550--104598	20	2.6	18	83	6	62	18	4	2	75	1.06
104998--105056	31	1.9	31	96	0	109	32	15	18	33	1.92
104992--105065	31	2.4	31	82	11	105	33	14	18	32	1.92

Tables:   1

The End!