Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017527.1 Corchorus olitorius cultivar O-4 contig17560, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25974

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5310--5349
11
3.5
11
80
12
53
47
0
5
47
1.24
5302--5349
24
2.0
24
100
0
96
45
0
4
50
1.21
6124--6365
120
2.0
120
100
0
484
42
2
9
45
1.49
7583--7626
6
7.3
6
94
0
70
54
0
11
34
1.36
9054--9080
12
2.2
12
100
0
54
14
29
11
44
1.80
10780--10841
32
1.9
32
93
0
106
20
8
30
40
1.82
11021--11082
31
2.0
31
90
0
97
25
17
4
51
1.65
11151--11309
83
1.9
82
88
1
219
37
10
3
49
1.52
12291--12366
32
2.4
32
82
4
91
6
10
35
47
1.64
12291--12346
16
3.5
16
70
7
51
7
8
32
51
1.60
16530--16575
23
2.0
23
100
0
92
43
8
0
47
1.34
16855--17031
90
2.0
90
95
0
318
24
12
22
40
1.89
18103--18131
3
9.7
3
100
0
58
31
0
0
68
0.89
19907--19932
13
2.0
13
100
0
52
7
15
23
53
1.67
21972--22053
1
82.0
1
80
0
92
90
6
3
0
0.55
21972--22053
27
3.0
27
89
0
110
90
6
3
0
0.55

Tables:   1

The End!