Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017528.1 Corchorus olitorius cultivar O-4 contig17561, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50652

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7979--8265
151
1.9
151
91
1
468
43
11
11
32
1.78
8471--8564
45
2.2
44
86
7
140
37
21
6
35
1.79
11964--12005
18
2.4
17
88
7
66
23
11
19
45
1.83
14360--14556
2
98.5
2
100
0
394
50
49
0
0
1.00
17599--17677
40
2.0
39
90
2
122
43
25
10
21
1.84
18980--19022
2
21.5
2
100
0
86
51
0
0
48
1.00
23588--23633
18
2.6
18
89
0
65
56
17
2
23
1.52
25261--25291
8
3.9
8
91
0
53
87
0
3
9
0.66
27809--27847
11
3.6
11
83
16
55
46
0
7
46
1.31
28273--28353
41
2.0
41
97
0
153
22
13
24
39
1.90
32851--32886
12
3.0
12
83
0
54
8
5
8
77
1.11
36304--36350
21
2.3
21
82
7
62
19
6
8
65
1.41
37500--37561
30
2.1
30
93
0
106
30
22
17
29
1.97
40725--40749
11
2.3
11
100
0
50
8
0
28
64
1.22
43791--43834
2
22.0
2
100
0
88
50
0
0
50
1.00
46259--46332
28
2.7
27
88
10
107
20
14
21
43
1.88

Tables:   1

The End!