Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017529.1 Corchorus olitorius cultivar O-4 contig17562, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20385

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1669--1713
14
3.5
12
90
9
63
31
0
8
60
1.28
6555--6602
8
5.5
8
90
9
60
77
0
10
12
1.00
6560--6601
10
4.4
10
94
5
70
80
0
9
9
0.89
6966--7012
9
5.6
9
85
10
64
82
6
2
8
0.90
6967--7062
8
12.4
8
75
19
62
81
6
1
11
0.92
6963--7057
7
11.9
8
76
17
83
82
5
1
11
0.89
6963--7057
32
3.0
31
82
14
115
82
5
1
11
0.89
6966--7073
11
10.2
10
71
19
60
80
6
0
12
0.94
6966--7062
18
5.7
17
72
16
76
81
6
1
11
0.91
6991--7073
24
3.6
21
74
22
69
80
6
0
13
0.88
6975--7073
39
2.6
38
75
20
100
80
6
1
12
0.93
9367--9400
15
2.2
16
94
5
61
14
5
14
64
1.46
12897--12951
21
2.6
21
91
0
83
18
43
21
16
1.88
15433--15458
11
2.4
11
100
0
52
7
15
7
69
1.35
16218--16259
15
2.7
15
92
3
66
11
9
14
64
1.50
17507--17965
169
2.7
169
90
0
713
28
20
16
33
1.95
18114--18238
38
3.2
39
80
4
144
21
15
13
49
1.78
18202--19181
30
32.6
30
87
0
1323
19
14
19
45
1.85
19221--19295
28
2.8
28
88
8
102
20
13
22
44
1.86

Tables:   1

The End!