Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017532.1 Corchorus olitorius cultivar O-4 contig17565, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9942
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32


Found at i:465 original size:15 final size:15

Alignment explanation


    Indices: 431--472  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        421 TTACTCTGTT

                            
        431 TTGTTTTCTAGTTAAA
          1 TTGTTTTCT-GTTAAA

                        *  
        447 TTGTTTTCTGTTTAA
          1 TTGTTTTCTGTTAAA

                       
        462 TTGTTTTCTGT
          1 TTGTTTTCTGT

        473 CAACCTCTGT


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.14, C:0.07, G:0.14, T:0.64


Consensus pattern (15 bp):   
TTGTTTTCTGTTAAA

Found at i:848 original size:6 final size:7

Alignment explanation


    Indices: 812--854  Score: 59
    Period size: 7  Copynumber: 6.1  Consensus size: 7

        802 ACATAAGATC

                   
        812 AAATTAA
          1 AAATTAA

                  *
        819 AAATTAT
          1 AAATTAA

             *     
        826 AGATTAA
          1 AAATTAA

                *  
        833 AAATCAA
          1 AAATTAA

                   
        840 AAATTAA
          1 AAATTAA

                   
        847 AAATTAA
          1 AAATTAA

             
        854 A
          1 A

        855 TTTGCAAGTA


Statistics
Matches: 30,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
   7   30  1.00

ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28


Consensus pattern (7 bp):   
AAATTAA
Done.