Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017538.1 Corchorus olitorius cultivar O-4 contig17571, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25155

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
216--251
2
19.5
2
83
16
51
50
0
0
50
1.00
216--251
19
1.9
18
94
5
63
50
0
0
50
1.00
246--280
16
2.2
16
94
0
61
40
17
0
42
1.49
1375--1468
45
2.2
42
86
7
127
35
6
20
38
1.78
1672--1883
106
2.0
106
96
0
388
43
14
11
30
1.81
2977--3192
109
2.0
109
93
0
369
44
13
10
31
1.77
5485--5559
33
2.3
33
80
0
87
21
42
30
5
1.75
6870--6898
3
9.7
3
100
0
58
0
31
0
68
0.89
11371--11409
19
2.1
19
95
0
69
28
10
7
53
1.62
17912--17949
2
19.0
2
100
0
76
50
0
0
50
1.00
23853--23903
26
2.0
26
100
0
102
39
3
3
52
1.38

Tables:   1

The End!