Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017546.1 Corchorus olitorius cultivar O-4 contig17579, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90271

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1895
324
5.8
329
86
5
2509
31
15
17
36
1.91
2096--2167
27
2.7
26
84
6
81
51
2
6
38
1.43
2083--2263
97
1.9
97
88
4
278
53
4
7
34
1.50
2083--2279
95
2.1
97
85
5
267
53
4
8
33
1.51
5722--5773
2
26.0
2
96
0
95
48
0
1
50
1.12
7730--7799
28
2.5
28
86
9
90
25
7
15
51
1.69
19838--19989
77
2.0
77
90
0
241
28
21
14
35
1.92
24471--24536
23
3.0
20
75
16
60
39
12
9
39
1.74
30074--30131
28
2.1
28
100
0
116
25
15
24
34
1.95
42114--42166
26
2.0
26
100
0
106
30
15
20
33
1.93
86949--86974
13
2.0
13
100
0
52
15
7
0
76
0.99

Tables:   1

The End!