Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017547.1 Corchorus olitorius cultivar O-4 contig17580, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89417

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87--112
2
13.0
2
100
0
52
50
0
0
50
1.00
1822--1875
2
26.5
2
89
10
83
46
3
0
50
1.19
15825--15946
40
3.1
39
88
7
174
42
15
8
33
1.77
15942--15996
24
2.2
25
83
3
76
38
16
12
32
1.86
30403--30529
45
2.7
47
92
4
222
21
11
17
50
1.76
40616--40654
20
1.9
20
84
5
51
23
12
35
28
1.91
50321--50371
26
2.0
26
92
0
84
50
9
9
29
1.67
51333--51359
3
9.0
3
100
0
54
33
0
66
0
0.92
56280--56544
139
1.9
139
92
1
444
33
11
13
41
1.80
56973--57031
30
1.9
30
86
3
82
52
8
6
32
1.58
78674--78761
36
2.4
36
98
0
167
37
3
10
48
1.54
84442--84468
2
13.5
2
100
0
54
51
0
0
48
1.00
87512--87601
45
2.0
45
82
0
108
23
26
18
31
1.98
89280--89410
20
6.5
20
80
0
145
36
5
29
28
1.79
89281--89417
40
3.4
40
95
2
247
37
5
29
27
1.80

Tables:   1

The End!